MEGA to Filen Transfer: 3 Practical Ways to Move Your Files Fast

Learn how to transfer files from MEGA to Filen with three proven methods: browser download/upload, desktop sync bridge, or a cloud-to-cloud transfer using CloudsLinker. Choose the fastest path for your data size and avoid re-upload hassles.

Introduction

If you're searching for a MEGA to Filen transfer, you're already past the decision phase. The real question is how to move your files without wasting hours on downloads, re-uploads, or broken folder structures. This guide gives you three clear options: a quick browser move for small folders, a desktop sync bridge for more control, and a fully cloud-based transfer with CloudsLinker for the fastest, hands-off migration. Pick the method that fits your data size and your patience level, then start with a small test folder before scaling up.

Start Cloud Transfer Compare Methods

Quick reality check: If your library is bigger than your local drive (or your upload speed is slow), skip straight to the cloud-to-cloud method to avoid long local uploads.

Pick a Method in 30 Seconds

Fastest setup

Browser Transfer

Best for small moves or quick one-time transfers.

Most control

Desktop Sync Bridge

Great if you want visibility, pause/resume, and local verification.

Hands-off

Cloud-to-Cloud

Ideal for large libraries or limited local bandwidth.

Method 1: Download from MEGA, Upload to Filen (Browser)

Best for: small folders, one-time transfers, and minimal setup.
Trade-off: your internet connection does the full download + upload loop.

Step 0: Prep the folder so it uploads cleanly

Before you download anything, decide what the top-level folder should look like in Filen. If you want a single parent folder in Filen (recommended), keep that same top folder selected in MEGA. This prevents files from scattering across your Filen root after upload.

Step 1: Download from MEGA in the web app

Open your MEGA account in a browser, select the files or folders you want, and use the download option. MEGA will often package folders into a ZIP file for convenience.

If the download is large, consider splitting it into a few smaller batches. This makes it easier to resume if something fails and keeps your local disk from filling up unexpectedly.

Step 2: Unzip and verify locally

If MEGA delivered a ZIP, extract it to a clean folder and make sure the structure looks right. This is the best moment to rename top-level folders or remove anything you no longer want.

Step 3: Upload into Filen

Log in to the Filen web app, create a destination folder, and upload the files you just downloaded. For large folders, drag-and-drop is usually faster than selecting files one by one.

Keep the browser tab open until the upload finishes. If you need to pause, stop at a clean boundary (one folder fully uploaded) so you can easily resume without duplicates.

This route is straightforward, but it's also the most bandwidth-heavy. If your MEGA archive is large, consider one of the next two methods to avoid running long uploads from your laptop.

Need a hands-off option? Use cloud-to-cloud Open Filen

Method 2: Desktop Sync Bridge (MEGA App + Filen Desktop)

Best for: large libraries when you want visibility and control.
Trade-off: requires local disk space and time for syncing.

Think of this method as a two-leg bridge. You sync from MEGA down to a local folder using MEGA's desktop app, then sync that local folder up to Filen using the Filen desktop client. Filen documents its desktop client and sync modes in the Filen Desktop Client guide.

Create a dedicated local folder (for example, "MEGA-to-Filen") so the transfer has a clean workspace.
Install the MEGA desktop app and enable sync only for the folders you plan to migrate. Avoid syncing your entire MEGA drive if you don't need it.
Wait for the MEGA download to fully finish. Large folders may take a while, so verify that the local size and file count look reasonable.
Install Filen's desktop client and set up a sync task that uploads that same local folder to a dedicated destination folder in Filen.
Let Filen upload the contents. Once verified, you can disconnect the MEGA sync to free disk space.

When this method shines

You want to see files locally before they land in Filen.
You need a pause/resume option without restarting the whole job.
You plan to clean or reorganize folders mid-transfer.

Common mistakes to avoid

Syncing too many folders at once and running out of disk space.
Pointing Filen sync to the MEGA app's cache instead of the real folder.
Renaming the local folder while a sync is still running.

Tip: If your MEGA archive is huge, start with a small folder to validate structure and file naming before the full sync runs overnight.

Prefer not to sync locally? Use cloud-to-cloud Filen Desktop Guide

Method 3: Cloud-to-Cloud Transfer with CloudsLinker

Best for: large transfers, limited local bandwidth, and hands-off migration.
Trade-off: you're relying on a third-party transfer service.

If you want the migration to run online without tying up your computer, a cloud-to-cloud tool like CloudsLinker can connect MEGA and Filen and move data directly between them. This is the best choice if your data is large, your upload speed is limited, or you want the transfer to keep running while your computer is off.

How it typically works

Connect your MEGA account as the source.
Connect your Filen account as the destination.
Pick the folders to transfer and launch the job.

Why people choose it

No local download or re-upload cycle.
Transfers keep running even if your device is off.
Good for large, multi-folder migrations.

Step-by-step setup (detailed)

Open CloudsLinker and start a new transfer task. Choose MEGA as the source and Filen as the destination.
Authenticate each account. Grant access only to the folders you need to move, not your entire drive, if you want tighter control.
Select the exact source folders in MEGA and the target folder in Filen. For clean organization, create a dedicated destination folder in Filen first.
Review transfer options. If the interface offers choices like "skip existing files" or "overwrite," pick the one that matches your intent. For first-time migrations, skip existing files is often the safer option.
If file filtering is available, exclude temporary folders or items you no longer want. This reduces clutter in Filen and shortens transfer time.
Start the transfer and keep an eye on the job status page. Most services provide progress, file counts, and error logs that help confirm everything is moving correctly.

Recommended transfer settings

Use "skip existing" on the first run to avoid duplicates.
Enable verification or checksums if the tool provides it.
Keep transfer concurrency modest if you notice throttling.

After the transfer

Spot-check a few folders in Filen to confirm file counts.
Review any error log and re-run only the failed items.
Keep the task saved so you can re-run an incremental sync later.

Start Cloud Transfer Create a Filen Account

MEGA vs Filen at a glance

Category	MEGA	Filen
Security model	End-to-end encryption highlighted in MEGA's Chrome listing.	Zero-knowledge encryption explained in Filen's docs.
Primary focus	Large file storage and sharing with strong privacy.	Encrypted storage with privacy-first design.
Client apps	Web, desktop, and mobile.	Web, desktop, and mobile.
Best-fit use case	Sharing and storing big files securely.	Private, long-term encrypted storage and backups.

Before You Start: Quick Prep Checklist

Enable extra account protection in Filen. The web settings page shows where to manage security and 2FA: Filen web settings.
Organize your MEGA folders so the transfer mirrors the structure you want in Filen.
Run a small test transfer first to confirm naming, permissions, and file integrity.
If you use the desktop sync bridge, make sure you have enough local disk space for the temporary copy.
If you use cloud-to-cloud, decide whether you want a one-time move or a repeatable sync. This choice affects whether you keep the transfer task saved for later runs.
Consider cleaning up duplicates or old exports in MEGA before migration to reduce transfer time.

FAQ

Not if you choose the right method. The browser and desktop sync methods preserve folder structure as long as you upload or sync the top-level folders directly.

It can be, as long as you're comfortable authorizing a third-party service. Review the provider's security documentation and only grant access to the folders you plan to move.

In most cases, a cloud-to-cloud transfer is the fastest overall because it avoids local upload limits. If you prefer more control, the desktop sync bridge is a strong alternative.

Step-by-Step Video: Transfer Files from MEGA to Filen

If you prefer learning by watching, this video walks you through the complete process of transferring files from MEGA to Filen. It shows how to connect both cloud accounts, choose source folders, adjust transfer options when needed, and complete the migration without downloading files to your local device. This method is efficient, stable, and works well for both personal file collections and larger data libraries.

Conclusion

The best MEGA to Filen transfer method depends on your data size and how involved you want to be. If you're moving a few folders, the browser route is simple. If you want visibility and control, use the desktop sync bridge. And if you want the fastest, most hands-off option, use a cloud-to-cloud transfer with CloudsLinker and let the job run online. Start small, confirm the structure, then move the rest with confidence.

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